saving . . . saved Code file Adenosine.mol and Alpha-D-glucopyranose.mol has been deleted. Code file Adenosine.mol and Alpha-D-glucopyranose.mol has been hidden .
Code file Adenosine.mol and Alpha-D-glucopyranose.mol
Title
Question
The code files doesn't have the hydrogen molecules as shown in video. How can I add them?

Jmol-Application Structures-from-Database 07-08 min 10-20 sec 07-09-20, 11:32 a.m. hbammkanti

Answers:


   To add hydrogens to the model on the panel, do the following:

   Open the modelkit menu on the toolbar. From the dropdown options, select fix hydrogens and minimize. This will add hydrogens to the model.


07-09-20, 1:35 p.m. snehalathak


Another way to do this is to open the Script Console and type:
calculate hydrogens
You then may need to optimize geometry with this command:
minimize

14-07-22, 9:07 p.m. AngelHerraez


Log-in to answer to this question.